PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G128800.1
Common NameB456_008G128800, LOC105763947
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 488aa    MW: 54545.1 Da    PI: 5.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G128800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12306351454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr  +P+       +++Ka+ L  Av YI +L
  Gorai.008G128800.1 306 NHVEAERQRREKLNHRFYALRAAVPNV-----SRMDKASLLSDAVTYITEL 351
                         799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.0E-5326214IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.33E-13300356No hitNo description
PROSITE profilePS5088816.259302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16302365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9306351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-16306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-14308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSFSQE TPPSTLQQRL QFIVQSHQEW CTYAIFWQTS NDDHGRLFLA  60
WEDGHFQGTK DTSPKSTPNN NNNNDMYSFQ GLHNERRNVL KRLQALIGDN HDISGSLVDG  120
TDITDAEWFY VMSLTRSFSL GDGVLGKVLS TGSLVWLTGA HELQFNGCER AREAQLHGIR  180
TLVCIPTNRG VLELGSSDMI KENCEFVQQV KSLFGFDPNL TSGSTQFLER TISFPDIGLL  240
AGIEEENGGP DNKTIRDLKP GQQSSYVDSE NSDFDCPLLA VNNTENIRTP KKRGRKPCLR  300
RDTPVNHVEA ERQRREKLNH RFYALRAAVP NVSRMDKASL LSDAVTYITE LKSKIKDLES  360
QLRKVCNEKV KVETIDAMDN QSTTTSEEQA AARPSNSSSA ATGRFSDLQL DVKVKGNDDA  420
IIRVQSENVN YPSARLMSAL RDLEFQVHHA SMSCVNELML QDIVAKIPYG LTSEEAIKSA  480
LLWRLHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-35252178195Transcription factor MYC3
4rqw_B3e-35252178195Transcription factor MYC3
4rs9_A3e-35252178195Transcription factor MYC3
4yz6_A3e-35252178195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5912581e-83JX591258.1 Gossypium hirsutum clone NBRI_GE26339 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437808.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0D2U2790.0A0A0D2U279_G
STRINGPOPTR_0002s17750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-86bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]